Code and scripts for published articles

QIIME 2 is an integrated analytic tool for analyzing microbial genomic sequencing data.

Various plugin modules are available on QIIME 2, from pre-processing to visualization. We provide an example of short-read 16S rRNA sequencing-based analysis for identifying microbial compositions of different groups, classified by their clinical conditions. Example dataset was prepared that a subset of NCBI BioProject PRJNA282010, which categorized into COPD, healthy smoker, healthy volunteer, and negative control. The metadata and manifest files which were used for analyzing QIIME 2 example data are available.