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Systems Biology

PUBLICATIONS from the lab

* Please refer Dr. Jung's page for his previous publications

2024

Sora Kim, Sungwon Jung. "GVAF: generalized, flexible filtering software for annotated variant files" Genes Genomics, doi: 10.1007/s13258-024-01580-0, 2024.

2023

“Data-Driven Diagnosis of Rare Genetic Disorders - Toward Medical Device Development”, The 17th International Conference on Data and Text Mining in Biomedical Informatics (DTMBIO) 2023

2022

Sung Eun Hong, Jana Kneissl, Anna Cho, Man Jin Kim, Soojin Park, Jeongeun Lee, Sijae Woo, Sora Kim, Jun-Soon Kim, Soo Yeon Kim, Sungwon Jung, Jinkuk Kim, Je-Young Shin, Jong-Hee Chae,Murim Choi "Transcriptome-based variant calling and aberrant mRNA discovery enhance diagnostic efficiency for neuromuscular diseases" Diagnostics, 59:1075–1081. ,2022

2021

“Informatics-Driven Efforts for the Diagnosis of Rare Genetic Disorders”, BIOINFO 2021

“유전성 뇌전증 여부 판별 모델”, Technical Report GGMS-TR-20210459, Gachon Institute of Genome Medicine and Science

Jongmin Lee, Sangtae Choi, Donghae Jung, YunJae Jung, Jung Ho Kim, Sungwon Jung, Won-Suk Lee. "Mutational Characterization of Colorectal Cancer from Korean Patients with Targeted Sequencing" Journal of Cancer, 12(24):7300-7310. doi:10.7150/jca.61324, 2021

Christopher J. Collins, Fan Yi, Remwilyn Dayuha, Phi Duong, Simon Horslen, Michelle Camarata, Ayse K. Coskun, Roderick H. J. Houwen, Tudor L. Pop, Heinz Zoller, Han-wook Yoo, Sung Won Jung, Karl H. Weiss, Michael L. Schilsky, Peter Ferenci, and Si Houn Hahn. “Direct Measurement of ATP7B Peptides Is Highly Effective in the Diagnosis of Wilson Disease” Gastroenterology, 160(7):2367-2382, 2021.

Sung-Yoon Kang, Hyojung Kim, Sungwon Jung, Sang Min Lee & Sang Pyo Lee. “The lung microbiota in Korean patients with non-tuberculous mycobacterial pulmonary disease” BMC Microbiology, 21:84, 2021.

2020

Jongmin Lee, Hye Kyung Hong, Sheng-Bin Peng, Tae Won Kim, Woo Yong Lee, Seong Hyun Yun, Hee Cheol Kim, Jiangang Liu, Philip J. Ebert, Amit Aggarwal, Sungwon Jung & Yong Beom Cho. “Identifying metastasis-initiating miRNA-target regulations of colorectal cancer from expressional changes in primary tumors” Scientific Reports, 10:14919,2020.

Min Jin Ji, Sungwon Jung, Ha Eun Seo, Sang Young Kim, Woo Ram Kim, Sora Kim, Jin Sook Lee, Young Noh. “Heterozygous TREM2 Mutation in Semantic Variant of Primary Progressive Aphasia” Journal of Clinical Neurology, 16(2):352-354, 2020.

Hyojung Kim, Sora Kim and Sungwon Jung. "Instruction of microbiome taxonomic profiling based on 16S rRNA sequencing" Journal of Microbiology, 58(3):193-205, 2020.

2019

"통합 데이터 분석 기반 뇌신경계 유전질환 진단 기술 개발”, 한국지능시스템학회 추계학술대회 2019

Hee Joo Kim, Jinsun Jang, Eun-Hui Lee, Sungwon Jung, Joo Young Roh and Yunjae Jung. "Decreased expression of response gene to complement 32 in psoriasis and its association with reduced M2 macrophage polarization" The Journal of Dermatology, 46(2):166-168, 2019.

Sungwon Jung. "KEDDY: a knowledge-based statistical gene set test method to detect differential functional protein-protein interactions" Bioinformatics, 35(4):619-627, 2019.

2018

"Developing and Approach to Diagnose Neurodevelopmental Disorders based on Integrated Data Analysis”, The 8th Annual Translational Bioinformatics Conference and BIOINFO of KSBi 2018

Hyojung Kim, Sang Pyo Lee, Shin Myung Kang, Sung-Yoon Kang, Sungwon Jung and Sang Min Lee. "Comparison of differences in microbial compositions between negative controls and subject samples with varying analysis configurations" Allergy Asthma Respir Dis, 6(5):255-262, 2018.

Dongchan Kim, Sungwon Jung and HyunWook Park. "DRF-GRAPPA: A Parallel MRI Method with a Direct Reconstruction Filter" Journal of the Korean Physical Society, 73(1):130-137, 2018.

Sungwon Jung. "Implications of publicly available genomic data resources in searching for therapeutic targets of obesity and type 2 diabetes" Experimental & Molecular Medicine, 50:43, 2018.

2016

Sungwon Jung. "In-silico interaction-resolution pathway activity quantification and application to identifying cancer subtypes" BMC Medical Informatics and Decision Making, 16(Suppl 1):55, 2016.

Christophe R. Legendre, Michael J. Demeure, Timothy G. Whitsett, Gerald C. Gooden, Kimberly J. Bussey, Sungwon Jung, Tembe Waibhav, Seungchan Kim and Bodour Salhia. "Pathway Implications of Aberrant Global Methylation in Adrenocortical Cancer" PLoS One, 11(3):e0150629, 2016.

2015

Hyosil Kim, Ju-Hwa Kim, So Youn Kim, Deokyeon Jo, Ho Jun Park, Jihyun Kim, Sungwon Jung, Hyun Seok Kim and KiYoung Lee. "Meta-Analysis of Large-Scale Toxicogenomic Data Finds Neuronal Regeneration Related Protein and Cathepsin D to Be Novel Biomarkers of Drug-Induced Toxicity" PLoS One, 10(9):e0136698, 2015.

Bo Young Oh, Woo Yong Lee, Sungwon Jung, Hye Kyung Hong, Do-Hyun Nam, Yoon Ah Park, Jung Wook Huh, Seong Hyeon Yun, Hee Cheol Kim, Ho-Kyung Chun and Yong Beom Cho. "Correlation between tumor engraftment in patient-derived xenograft models and clinical outcomes in colorectal cancer patients" Oncotarget, 6(18):16059-68, 2015.

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